Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroquinate synthase | BST98_RS01010 | Not Available | Positive | 207917 - 208996 | 38843.0 |
| spor domain-containing protein | BST98_RS01015 | Not Available | Positive | 209011 - 210513 | 55604.8 |
| adenine-specific dna-methyltransferase | BST98_RS01020 | Not Available | Positive | 210621 - 211463 | 32197.2 |
| duf2970 domain-containing protein | BST98_RS01025 | Not Available | Negative | 211447 - 211644 | 7361.49 |
| ribulose-phosphate 3-epimerase | BST98_RS01030 | Not Available | Positive | 211790 - 212464 | 24789.1 |
| phosphoglycolate phosphatase | BST98_RS01035 | Not Available | Positive | 212464 - 213153 | 25134.2 |
| tryptophan--trna ligase | BST98_RS01040 | Not Available | Positive | 213251 - 214273 | 37653.1 |
| exem/nuch family extracellular endonuclease | BST98_RS01045 | Not Available | Positive | 214531 - 216876 | 86352.8 |
| aminodeoxychorismate/anthranilate synthase component ii | BST98_RS01050 | Not Available | Positive | 216976 - 217560 | 21296.7 |
| aspartate aminotransferase family protein | BST98_RS01055 | Not Available | Positive | 217905 - 219125 | 43952.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

