Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pleiotropic regulatory protein rsms | BST98_RS10140 | Not Available | Positive | 2173268 - 2173435 | 5967.15 |
| eal domain-containing protein | BST98_RS10145 | Not Available | Positive | 2173702 - 2175234 | 58692.4 |
| hypothetical protein | BST98_RS10150 | Not Available | Positive | 2175571 - 2175972 | 14643.4 |
| tolc family protein | BST98_RS10155 | Not Available | Positive | 2176110 - 2177387 | 47998.1 |
| efflux rnd transporter periplasmic adaptor subunit | BST98_RS10160 | Not Available | Positive | 2177396 - 2179120 | 62999.7 |
| efflux rnd transporter permease subunit | BST98_RS10165 | Not Available | Positive | 2179120 - 2182245 | 113973.0 |
| copper-binding protein | BST98_RS10170 | Not Available | Positive | 2182371 - 2182982 | 22879.3 |
| dipeptide/tripeptide permease dtpa | BST98_RS10175 | Not Available | Negative | 2183085 - 2184566 | 53606.8 |
| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase | BST98_RS10180 | Not Available | Positive | 2184923 - 2185735 | 29913.8 |
| dha2 family efflux mfs transporter permease subunit | BST98_RS10185 | Not Available | Negative | 2185832 - 2187370 | 55973.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

