Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrolipoyl dehydrogenase | BST98_RS00960 | Not Available | Negative | 196415 - 197866 | 52511.1 |
| glutathione peroxidase | BST98_RS00965 | Not Available | Negative | 197948 - 198676 | 26587.6 |
| dna-binding transcriptional regulator oxyr | BST98_RS00970 | Not Available | Positive | 198836 - 199735 | 33267.7 |
| penicillin-binding protein 1a | BST98_RS00975 | Not Available | Negative | 199823 - 202390 | 94392.6 |
| type iv pilus biogenesis protein pilm | BST98_RS00980 | Not Available | Positive | 202541 - 203539 | 37001.7 |
| piln domain-containing protein | BST98_RS00985 | Not Available | Positive | 203536 - 204177 | 24034.2 |
| type 4a pilus biogenesis protein pilo | BST98_RS00990 | Not Available | Positive | 204174 - 204764 | 22718.9 |
| pilus assembly protein pilp | BST98_RS00995 | Not Available | Positive | 204773 - 205288 | 19137.3 |
| type iv pilus secretin pilq | BST98_RS01000 | Not Available | Positive | 205411 - 207039 | 59062.2 |
| shikimate kinase arok | BST98_RS01005 | Not Available | Positive | 207369 - 207887 | 19512.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

