Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase iron-sulfur subunit | BST98_RS09940 | Not Available | Negative | 2128494 - 2129204 | 26380.1 |
| succinate dehydrogenase flavoprotein subunit | BST98_RS09945 | Not Available | Negative | 2129219 - 2130985 | 64427.6 |
| succinate dehydrogenase, hydrophobic membrane anchor protein | BST98_RS09950 | Not Available | Negative | 2130986 - 2131333 | 12951.4 |
| succinate dehydrogenase cytochrome b556 subunit | BST98_RS09955 | Not Available | Negative | 2131327 - 2131728 | 14421.3 |
| citrate synthase | BST98_RS09960 | Not Available | Positive | 2132115 - 2133404 | 48246.6 |
| nif3-like dinuclear metal center hexameric protein | BST98_RS09965 | Not Available | Negative | 2133536 - 2134294 | 27811.2 |
| duf2517 family protein | BST98_RS09970 | Not Available | Negative | 2134476 - 2134682 | 8007.94 |
| duf1853 family protein | BST98_RS09975 | Not Available | Positive | 2134802 - 2135590 | 31085.8 |
| phosphoglucomutase (alpha-d-glucose-1,6-bisphosphate-dependent) | BST98_RS09980 | Not Available | Negative | 2135710 - 2137356 | 58971.9 |
| replication initiation negative regulator seqa | BST98_RS09985 | Not Available | Negative | 2137406 - 2137951 | 20430.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

