Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe(2+) transporter permease subunit feob | BST98_RS09890 | Not Available | Negative | 2115363 - 2117639 | 83041.1 |
| feoa family protein | BST98_RS09895 | Not Available | Negative | 2117639 - 2117866 | 8086.25 |
| murein dd-endopeptidase mepm | BST98_RS09900 | Not Available | Negative | 2118082 - 2119431 | 50139.1 |
| zinc abc transporter substrate-binding protein znua | BST98_RS09905 | Not Available | Negative | 2119434 - 2120369 | 34656.9 |
| zinc abc transporter atp-binding protein znuc | BST98_RS09910 | Not Available | Positive | 2120466 - 2121215 | 27546.7 |
| zinc abc transporter permease subunit znub | BST98_RS09915 | Not Available | Positive | 2121227 - 2122012 | 27864.6 |
| succinate--coa ligase subunit alpha | BST98_RS09920 | Not Available | Negative | 2122101 - 2122973 | 29847.2 |
| adp-forming succinate--coa ligase subunit beta | BST98_RS09925 | Not Available | Negative | 2122973 - 2124139 | 41272.5 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | BST98_RS09930 | Not Available | Negative | 2124277 - 2125488 | 44332.6 |
| 2-oxoglutarate dehydrogenase e1 component | BST98_RS09935 | Not Available | Negative | 2125520 - 2128342 | 106187.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

