Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase | BST98_RS09740 | Not Available | Positive | 2087547 - 2088443 | 33149.8 |
| histidinol dehydrogenase | BST98_RS09745 | Not Available | Positive | 2088448 - 2089743 | 46385.4 |
| histidinol-phosphate transaminase | BST98_RS09750 | Not Available | Positive | 2089765 - 2090811 | 38648.5 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | BST98_RS09755 | Not Available | Positive | 2090824 - 2091897 | 39788.4 |
| imidazole glycerol phosphate synthase subunit hish | BST98_RS09760 | Not Available | Positive | 2091897 - 2092523 | 22845.9 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | BST98_RS09765 | Not Available | Positive | 2092538 - 2093275 | 26392.5 |
| imidazole glycerol phosphate synthase subunit hisf | BST98_RS09770 | Not Available | Positive | 2093285 - 2094058 | 28476.1 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | BST98_RS09775 | Not Available | Positive | 2094055 - 2094675 | 22954.6 |
| vf530 family dna-binding protein | BST98_RS09780 | Not Available | Negative | 2094781 - 2094993 | 8448.27 |
| thymidine kinase | BST98_RS09785 | Not Available | Negative | 2095018 - 2095596 | 21935.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

