Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate--trna ligase | BST98_RS09640 | Not Available | Negative | 2061845 - 2063623 | 66069.3 |
| duf72 domain-containing protein | BST98_RS09645 | Not Available | Positive | 2063866 - 2064762 | 34041.7 |
| carboxy-s-adenosyl-l-methionine synthase cmoa | BST98_RS09650 | Not Available | Positive | 2064934 - 2065662 | 27204.6 |
| trna 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase cmob | BST98_RS09655 | Not Available | Positive | 2065681 - 2066655 | 37746.2 |
| atp-dependent zinc protease | BST98_RS09660 | Not Available | Positive | 2066744 - 2067541 | 29915.9 |
| inactive transglutaminase family protein | BST98_RS09665 | Not Available | Positive | 2067560 - 2069071 | 55902.5 |
| alpha-l-glutamate ligase-like protein | BST98_RS09670 | Not Available | Positive | 2069075 - 2070049 | 35654.4 |
| vc2046/so_2500 family protein | BST98_RS09675 | Not Available | Positive | 2070194 - 2070727 | 19715.5 |
| sdr family oxidoreductase | BST98_RS09680 | Not Available | Positive | 2070959 - 2071639 | 25011.0 |
| bifunctional acetaldehyde-coa/alcohol dehydrogenase | BST98_RS09685 | Not Available | Negative | 2071723 - 2074416 | 97107.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

