Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome ubiquinol oxidase subunit i | BST98_RS09590 | Not Available | Negative | 2051243 - 2052829 | 58917.3 |
| n-acetylneuraminate anomerase | BST98_RS09595 | Not Available | Negative | 2053859 - 2054326 | 17559.1 |
| n-acetylmannosamine kinase | BST98_RS09600 | Not Available | Negative | 2054389 - 2055267 | 30241.2 |
| n-acetylmannosamine-6-phosphate 2-epimerase | BST98_RS09605 | Not Available | Negative | 2055264 - 2055971 | 24748.8 |
| murr/rpir family transcriptional regulator | BST98_RS09610 | Not Available | Negative | 2056231 - 2057106 | 31296.4 |
| dihydrodipicolinate synthase family protein | BST98_RS09615 | Not Available | Positive | 2057430 - 2058332 | 31955.3 |
| holliday junction branch migration dna helicase ruvb | BST98_RS09620 | Not Available | Negative | 2058507 - 2059517 | 37532.3 |
| holliday junction branch migration protein ruva | BST98_RS09625 | Not Available | Negative | 2059536 - 2060159 | 22622.4 |
| crossover junction endodeoxyribonuclease ruvc | BST98_RS09630 | Not Available | Negative | 2060329 - 2060850 | 18323.4 |
| yebc/pmpr family dna-binding transcriptional regulator | BST98_RS09635 | Not Available | Negative | 2060867 - 2061613 | 26436.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

