Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tol-pal system protein ybgf | BST98_RS09540 | Not Available | Negative | 2044005 - 2044739 | 27349.2 |
| peptidoglycan-associated lipoprotein pal | BST98_RS09545 | Not Available | Negative | 2044756 - 2045301 | 19558.2 |
| tol-pal system beta propeller repeat protein tolb | BST98_RS09550 | Not Available | Negative | 2045349 - 2046698 | 49844.4 |
| cell envelope integrity protein tola | BST98_RS09555 | Not Available | Negative | 2046710 - 2047798 | 40381.1 |
| protein tolr | BST98_RS09560 | Not Available | Negative | 2047809 - 2048252 | 15862.2 |
| protein tolq | BST98_RS09565 | Not Available | Negative | 2048255 - 2048941 | 25272.9 |
| tol-pal system-associated acyl-coa thioesterase | BST98_RS09570 | Not Available | Negative | 2048938 - 2049345 | 15536.0 |
| cyd operon protein ybge | BST98_RS09575 | Not Available | Negative | 2049664 - 2049975 | 11294.5 |
| cytochrome bd-i oxidase subunit cydx | BST98_RS09580 | Not Available | Negative | 2049972 - 2050076 | 3995.82 |
| cytochrome d ubiquinol oxidase subunit ii | BST98_RS09585 | Not Available | Negative | 2050088 - 2051224 | 41649.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

