Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-alanine exporter alae | BST98_RS09490 | Not Available | Negative | 2034496 - 2034948 | 16595.5 |
| ofa family mfs transporter | BST98_RS09495 | Not Available | Negative | 2035263 - 2036474 | 42627.3 |
| lytr/algr family response regulator transcription factor | BST98_RS09500 | Not Available | Negative | 2036724 - 2037443 | 27645.4 |
| lyts/yhck type 5tm receptor domain-containing protein | BST98_RS09505 | Not Available | Negative | 2037462 - 2039090 | 60193.1 |
| duf6404 family protein | BST98_RS09510 | Not Available | Negative | 2039206 - 2039541 | 13034.9 |
| Trna-ser | Not Available | Not Available | Positive | 2039706 - 2039796 | Not Available |
| Trna-ser | Not Available | Not Available | Positive | 2039822 - 2039909 | Not Available |
| upf0149 family protein | BST98_RS09525 | Not Available | Positive | 2040157 - 2040732 | 20826.3 |
| response regulator | BST98_RS09530 | Not Available | Negative | 2040776 - 2042623 | 69605.0 |
| quinolinate synthase nada | BST98_RS09535 | Not Available | Negative | 2042794 - 2043837 | 37966.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

