Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna isopentenyl-2-thiomethyl-a-37 hydroxylase miae | BST98_RS09235 | Not Available | Positive | 1978613 - 1979398 | 30156.4 |
| type i dna topoisomerase | BST98_RS09240 | Not Available | Negative | 1979507 - 1982155 | 98423.5 |
| ycin family protein | BST98_RS09245 | Not Available | Positive | 1982740 - 1982988 | 9315.07 |
| protease sohb | BST98_RS09250 | Not Available | Negative | 1983071 - 1984132 | 38838.0 |
| ycik family oxidoreductase | BST98_RS09255 | Not Available | Positive | 1984409 - 1985170 | 27249.8 |
| 23s rrna pseudouridine(2605) synthase rlub | BST98_RS09260 | Not Available | Negative | 1985254 - 1986411 | 43946.0 |
| l-threonylcarbamoyladenylate synthase | BST98_RS09265 | Not Available | Negative | 1986771 - 1987394 | 23236.9 |
| rnase rnm | BST98_RS09270 | Not Available | Negative | 1987414 - 1988283 | 32591.9 |
| 3-deoxy-7-phosphoheptulonate synthase | BST98_RS09275 | Not Available | Positive | 1988579 - 1989592 | 36547.6 |
| anthranilate synthase component 1 | BST98_RS09280 | Not Available | Positive | 1989592 - 1991250 | 61236.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

