Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i ribonucleotide reductase maintenance protein yfae | BST98_RS09185 | Not Available | Positive | 1964401 - 1964691 | 10637.8 |
| arginine decarboxylase | BST98_RS09190 | Not Available | Negative | 1964738 - 1967029 | 85426.4 |
| putrescine-ornithine antiporter | BST98_RS09195 | Not Available | Negative | 1967100 - 1968440 | 47710.9 |
| meta domain-containing protein | BST98_RS09200 | Not Available | Negative | 1968738 - 1969613 | 31447.8 |
| cina family nicotinamide mononucleotide deamidase-related protein | BST98_RS09205 | Not Available | Negative | 1969900 - 1971114 | 45574.9 |
| tyrosine transporter tyrp | BST98_RS09210 | Not Available | Positive | 1971458 - 1972675 | 43520.2 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | BST98_RS09215 | Not Available | Positive | 1973011 - 1974987 | 75066.0 |
| methyltransferase | BST98_RS09220 | Not Available | Negative | 1975127 - 1976323 | 45904.9 |
| hth-type transcriptional regulator cysb | BST98_RS09225 | Not Available | Negative | 1976501 - 1977475 | 36097.4 |
| dna repair protein | BST98_RS09230 | Not Available | Positive | 1977776 - 1978537 | 28950.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

