Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5666 domain-containing protein | BST98_RS09135 | Not Available | Negative | 1949526 - 1950701 | 42441.6 |
| response regulator transcription factor | BST98_RS09140 | Not Available | Positive | 1950796 - 1951464 | 25226.6 |
| sensor histidine kinase | BST98_RS09145 | Not Available | Positive | 1951436 - 1952683 | 47953.8 |
| lipocalin family protein | BST98_RS09150 | Not Available | Positive | 1952702 - 1953292 | 22588.0 |
| abc transporter atp-binding protein/permease | BST98_RS09155 | Not Available | Negative | 1953289 - 1955037 | 66489.9 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | BST98_RS09160 | Not Available | Negative | 1955182 - 1956264 | 39706.5 |
| dna topoisomerase (atp-hydrolyzing) subunit a | BST98_RS09165 | Not Available | Negative | 1956479 - 1959100 | 97097.2 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | BST98_RS09170 | Not Available | Positive | 1959761 - 1960471 | 26228.7 |
| class 1a ribonucleoside-diphosphate reductase subunit alpha | BST98_RS09175 | Not Available | Positive | 1960957 - 1963224 | 85011.9 |
| class ia ribonucleoside-diphosphate reductase subunit beta | BST98_RS09180 | Not Available | Positive | 1963271 - 1964404 | 43331.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

