Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | BST98_RS09085 | Not Available | Positive | 1934783 - 1935994 | 44286.4 |
| nad(p)/fad-dependent oxidoreductase | BST98_RS09090 | Not Available | Positive | 1936262 - 1937485 | 44768.8 |
| s-(hydroxymethyl)glutathione synthase | BST98_RS09095 | Not Available | Positive | 1937628 - 1938200 | 20566.4 |
| dicarboxylate/amino acid:cation symporter | BST98_RS09100 | Not Available | Positive | 1938712 - 1939965 | 44023.5 |
| atp-dependent helicase | BST98_RS09105 | Not Available | Negative | 1940066 - 1942390 | 89904.4 |
| metal-dependent hydrolase | BST98_RS09110 | Not Available | Positive | 1942683 - 1943450 | 28136.8 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | BST98_RS09115 | Not Available | Positive | 1943659 - 1944762 | 41634.6 |
| trimethylamine n-oxide reductase system protein tore | BST98_RS09120 | Not Available | Positive | 1945328 - 1945504 | 6571.19 |
| pentaheme c-type cytochrome torc | BST98_RS09125 | Not Available | Positive | 1945542 - 1946720 | 44085.8 |
| trimethylamine-n-oxide reductase tora | BST98_RS09130 | Not Available | Positive | 1946741 - 1949203 | 92761.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

