Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pentaheme c-type cytochrome torc | BST98_RS08885 | Not Available | Negative | 1891281 - 1892462 | 44249.3 |
| periplasmic nitrate reductase, nape protein | BST98_RS08890 | Not Available | Negative | 1892515 - 1892685 | 6322.69 |
| 50s ribosomal protein l20 | BST98_RS08895 | Not Available | Negative | 1893484 - 1893837 | 13476.6 |
| 50s ribosomal protein l35 | BST98_RS08900 | Not Available | Negative | 1893880 - 1894074 | 7296.28 |
| translation initiation factor if-3 | BST98_RS08905 | Not Available | Negative | 1894175 - 1894726 | 20627.1 |
| threonine--trna ligase | BST98_RS08910 | Not Available | Negative | 1894730 - 1896661 | 73666.1 |
| fructosamine kinase family protein | BST98_RS08915 | Not Available | Positive | 1897184 - 1898050 | 33477.6 |
| hexitol phosphatase hxpb | BST98_RS08920 | Not Available | Positive | 1898186 - 1898839 | 23684.5 |
| cpxcg motif-containing cysteine-rich protein | BST98_RS08925 | Not Available | Positive | 1899222 - 1899425 | 7610.81 |
| riboflavin synthase | BST98_RS08930 | Not Available | Negative | 1899581 - 1900189 | 22302.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

