Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine-protein kinase/phosphatase uhpb | BST98_RS08835 | Not Available | Negative | 1879736 - 1881268 | 57476.8 |
| transcriptional regulator uhpa | BST98_RS08840 | Not Available | Negative | 1881268 - 1881876 | 21791.3 |
| mbl fold metallo-hydrolase | BST98_RS08845 | Not Available | Negative | 1882017 - 1882670 | 23786.3 |
| ycbk family protein | BST98_RS08850 | Not Available | Negative | 1883050 - 1883607 | 20561.9 |
| l,d-transpeptidase family protein | BST98_RS08855 | Not Available | Negative | 1883767 - 1885518 | 66981.5 |
| marr family winged helix-turn-helix transcriptional regulator | BST98_RS08860 | Not Available | Positive | 1885928 - 1886419 | 18460.3 |
| lysr family transcriptional regulator | BST98_RS08865 | Not Available | Positive | 1886498 - 1887364 | 31400.4 |
| tsup family transporter | BST98_RS08870 | Not Available | Negative | 1887294 - 1888073 | 27268.2 |
| group ii truncated hemoglobin | BST98_RS08875 | Not Available | Negative | 1888241 - 1888693 | 17102.3 |
| trimethylamine-n-oxide reductase tora | BST98_RS08880 | Not Available | Negative | 1888783 - 1891263 | 93618.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

