Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trml | BST98_RS00810 | Not Available | Negative | 162037 - 162501 | 17438.9 |
| envelope stress sensor histidine kinase cpxa | BST98_RS00815 | Not Available | Negative | 162595 - 163956 | 51834.5 |
| response regulator | BST98_RS00820 | Not Available | Negative | 163956 - 164645 | 26065.7 |
| cpxp family protein | BST98_RS00825 | Not Available | Positive | 164836 - 165321 | 18536.4 |
| 6-phosphofructokinase | BST98_RS00830 | Not Available | Positive | 165918 - 166880 | 34690.0 |
| triose-phosphate isomerase | BST98_RS00835 | Not Available | Negative | 166995 - 167765 | 26979.1 |
| duf3135 domain-containing protein | BST98_RS00840 | Not Available | Negative | 168012 - 168341 | 12502.3 |
| fad-binding oxidoreductase | BST98_RS00845 | Not Available | Negative | 168432 - 169172 | 27584.9 |
| helix-turn-helix transcriptional regulator | BST98_RS00850 | Not Available | Negative | 169182 - 169802 | 23808.5 |
| class ii fructose-bisphosphatase | BST98_RS00855 | Not Available | Negative | 169965 - 170972 | 36123.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

