Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chitinase c-terminal domain-containing protein | BST98_RS08385 | Not Available | Positive | 1796997 - 1800158 | 113171.0 |
| murein l,d-transpeptidase catalytic domain family protein | BST98_RS08390 | Not Available | Positive | 1800626 - 1801276 | 24329.6 |
| isochorismatase family cysteine hydrolase | BST98_RS08395 | Not Available | Positive | 1801421 - 1801984 | 21014.9 |
| alanine dehydrogenase | BST98_RS08400 | Not Available | Negative | 1802074 - 1803189 | 39407.0 |
| hypothetical protein | BST98_RS08405 | Not Available | Negative | 1803583 - 1803852 | 10154.2 |
| had family hydrolase | BST98_RS08410 | Not Available | Negative | 1803906 - 1804586 | 24872.7 |
| organoarsenical effux mfs transporter arsj | BST98_RS08415 | Not Available | Negative | 1804645 - 1805877 | 44418.5 |
| cyclin-dependent kinase inhibitor 3 family protein | BST98_RS08420 | Not Available | Negative | 1805927 - 1806430 | 18374.0 |
| arsj-associated glyceraldehyde-3-phosphate dehydrogenase | BST98_RS08425 | Not Available | Negative | 1806493 - 1807506 | 36745.1 |
| metalloregulator arsr/smtb family transcription factor | BST98_RS08430 | Not Available | Negative | 1807680 - 1808438 | 28575.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

