Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine abc transporter substrate-binding protein | BST98_RS08285 | Not Available | Positive | 1776568 - 1777305 | 27138.1 |
| arginine abc transporter permease artq | BST98_RS08290 | Not Available | Positive | 1777320 - 1778048 | 26363.6 |
| arginine abc transporter permease artm | BST98_RS08295 | Not Available | Positive | 1778048 - 1778719 | 24579.6 |
| lactoylglutathione lyase | BST98_RS08300 | Not Available | Positive | 1778782 - 1779222 | 16526.6 |
| qnr family pentapeptide repeat protein | BST98_RS08305 | Not Available | Negative | 1779278 - 1779916 | 24403.3 |
| cystatin domain-containing protein | BST98_RS08310 | Not Available | Negative | 1780050 - 1780718 | 23574.3 |
| sgnh/gdsl hydrolase family protein | BST98_RS08315 | Not Available | Positive | 1781229 - 1782446 | 45986.6 |
| dsre/dsrf/tusd sulfur relay family protein | BST98_RS08320 | Not Available | Negative | 1782541 - 1782897 | 12880.6 |
| shikimate kinase | BST98_RS08325 | Not Available | Positive | 1783179 - 1783715 | 20200.1 |
| eal domain-containing protein | BST98_RS08330 | Not Available | Positive | 1783808 - 1786873 | 117640.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

