Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ni/fe-hydrogenase, b-type cytochrome subunit | BST98_RS08135 | Not Available | Positive | 1747608 - 1748276 | 25603.6 |
| hyad/hybd family hydrogenase maturation endopeptidase | BST98_RS08140 | Not Available | Positive | 1748279 - 1748824 | 20226.4 |
| hypothetical protein | BST98_RS08145 | Not Available | Positive | 1748821 - 1750542 | 65090.4 |
| recx family transcriptional regulator | BST98_RS08150 | Not Available | Positive | 1750662 - 1751450 | 30240.1 |
| gnat family n-acetyltransferase | BST98_RS08155 | Not Available | Negative | 1751487 - 1751939 | 16937.2 |
| hydrogenase maturation nickel metallochaperone hypa | BST98_RS08160 | Not Available | Negative | 1752126 - 1752473 | 12613.1 |
| hydrogenase nickel incorporation protein hypb | BST98_RS08165 | Not Available | Negative | 1752488 - 1753225 | 27529.9 |
| hypothetical protein | BST98_RS08170 | Not Available | Positive | 1753556 - 1754125 | 21038.8 |
| membrane protein | BST98_RS08175 | Not Available | Negative | 1754354 - 1754749 | 14463.9 |
| heme utilization protein hutz | BST98_RS08180 | Not Available | Negative | 1754991 - 1755548 | 21053.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

