Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mets family nss transporter small subunit | BST98_RS08085 | Not Available | Positive | 1734436 - 1734540 | 3695.65 |
| hypothetical protein | BST98_RS08090 | Not Available | Positive | 1734719 - 1735231 | 19880.4 |
| duf2860 domain-containing protein | BST98_RS08095 | Not Available | Positive | 1735426 - 1736415 | 37168.9 |
| pyridoxal-dependent aspartate 1-decarboxylase panp | BST98_RS08100 | Not Available | Positive | 1736558 - 1738207 | 61635.8 |
| two-component system response regulator torr | BST98_RS08105 | Not Available | Negative | 1738820 - 1739533 | 27276.1 |
| pentaheme c-type cytochrome torc | BST98_RS08110 | Not Available | Positive | 1739735 - 1740901 | 43292.8 |
| trimethylamine-n-oxide reductase tora | BST98_RS08115 | Not Available | Positive | 1740976 - 1743507 | 93373.2 |
| molecular chaperone tord | BST98_RS08120 | Not Available | Positive | 1743712 - 1744359 | 24366.1 |
| hydrogenase small subunit | BST98_RS08125 | Not Available | Positive | 1744716 - 1745852 | 40914.1 |
| nickel-dependent hydrogenase large subunit | BST98_RS08130 | Not Available | Positive | 1745856 - 1747559 | 62493.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

