Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp cyclohydrolase ii | BST98_RS08030 | Not Available | Negative | 1721724 - 1722323 | 22250.7 |
| hypothetical protein | BST98_RS08035 | Not Available | Negative | 1722551 - 1722886 | 12395.7 |
| iron-sulfur cluster assembly scaffold protein | BST98_RS08040 | Not Available | Positive | 1723384 - 1724076 | 24792.8 |
| gggtgrt protein | BST98_RS08045 | Not Available | Positive | 1724143 - 1725144 | 35723.4 |
| manganese-dependent inorganic pyrophosphatase | BST98_RS08050 | Not Available | Positive | 1725412 - 1726317 | 33038.9 |
| patatin family protein | BST98_RS08055 | Not Available | Negative | 1726402 - 1727625 | 46419.8 |
| atp-dependent nuclease | BST98_RS08065 | Not Available | Negative | 1728224 - 1730257 | 75662.5 |
| dj-1/pfpi family protein | BST98_RS08070 | Not Available | Negative | 1730915 - 1731511 | 21849.3 |
| hypothetical protein | BST98_RS08075 | Not Available | Negative | 1731751 - 1732218 | 16989.4 |
| sodium-dependent transporter | BST98_RS08080 | Not Available | Positive | 1732953 - 1734434 | 53671.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

