Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system-associated fha domain protein tagh | BST98_RS07825 | Not Available | Negative | 1676032 - 1677501 | 55302.4 |
| type vi secretion system baseplate subunit tssg | BST98_RS07830 | Not Available | Negative | 1677514 - 1678521 | 38176.4 |
| type vi secretion system baseplate subunit tssf | BST98_RS07835 | Not Available | Negative | 1678485 - 1680251 | 66923.0 |
| type vi secretion system baseplate subunit tsse | BST98_RS07840 | Not Available | Negative | 1680254 - 1680691 | 16335.6 |
| type vi secretion system contractile sheath large subunit | BST98_RS07845 | Not Available | Negative | 1680696 - 1682174 | 55735.9 |
| type vi secretion system contractile sheath small subunit | BST98_RS07850 | Not Available | Negative | 1682228 - 1682725 | 18165.6 |
| polyhydroxyalkanoic acid system family protein | BST98_RS07855 | Not Available | Negative | 1683432 - 1683707 | 10370.4 |
| cache domain-containing protein | BST98_RS07860 | Not Available | Negative | 1683869 - 1685914 | 77540.3 |
| sigma-54-dependent transcriptional regulator | BST98_RS07865 | Not Available | Negative | 1685916 - 1687385 | 54984.7 |
| substrate-binding domain-containing protein | BST98_RS07870 | Not Available | Positive | 1687728 - 1688501 | 28381.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

