Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system paar protein | BST98_RS07775 | Not Available | Negative | 1661782 - 1662066 | 9331.07 |
| type vi secretion system impa family n-terminal domain-containing protein | BST98_RS07780 | Not Available | Negative | 1662114 - 1663541 | 53856.3 |
| type vi secretion system membrane subunit tssm | BST98_RS07785 | Not Available | Negative | 1663589 - 1667134 | 135405.0 |
| type vi secretion system protein tssa | BST98_RS07790 | Not Available | Negative | 1667158 - 1668606 | 54029.9 |
| type vi secretion system-associated protein vasi | BST98_RS07795 | Not Available | Negative | 1668616 - 1669278 | 24252.5 |
| sigma-54 interaction domain-containing protein | BST98_RS07800 | Not Available | Negative | 1669284 - 1670786 | 57027.2 |
| type vi secretion system atpase tssh | BST98_RS07805 | Not Available | Negative | 1670792 - 1673398 | 96713.7 |
| type ivb secretion system protein icmh/dotu | BST98_RS07810 | Not Available | Negative | 1673408 - 1674208 | 30432.2 |
| type vi secretion system baseplate subunit tssk | BST98_RS07815 | Not Available | Negative | 1674214 - 1675548 | 50262.8 |
| type vi secretion system lipoprotein tssj | BST98_RS07820 | Not Available | Negative | 1675548 - 1675997 | 16932.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

