Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm peptidoglycan-binding domain-containing protein | BST98_RS07725 | Not Available | Negative | 1649947 - 1653585 | 135165.0 |
| duf4123 domain-containing protein | BST98_RS07730 | Not Available | Negative | 1653587 - 1654114 | 20328.3 |
| type vi secretion system tip protein vgrg | BST98_RS07735 | Not Available | Negative | 1654114 - 1656177 | 76549.4 |
| hcp family type vi secretion system effector | BST98_RS07740 | Not Available | Negative | 1656286 - 1656807 | 19228.7 |
| d-alanyl-d-alanine endopeptidase | BST98_RS07745 | Not Available | Positive | 1657334 - 1658236 | 32704.8 |
| alpha/beta hydrolase | BST98_RS07750 | Not Available | Negative | 1658277 - 1659272 | 36671.8 |
| phasin family protein | BST98_RS07755 | Not Available | Negative | 1659549 - 1659905 | 13214.7 |
| phasin-related domain-containing protein | BST98_RS07760 | Not Available | Negative | 1659946 - 1660584 | 23208.8 |
| histidine phosphatase family protein | BST98_RS07765 | Not Available | Negative | 1660747 - 1661328 | 21695.6 |
| hypothetical protein | BST98_RS07770 | Not Available | Positive | 1661524 - 1661724 | 7885.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

