Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sir2 family nad+-dependent deacetylase | BST98_RS07625 | Not Available | Negative | 1628826 - 1629542 | 26542.4 |
| formate dehydrogenase subunit gamma | BST98_RS07630 | Not Available | Negative | 1629753 - 1630790 | 39124.9 |
| formate dehydrogenase fdh3 subunit beta | BST98_RS07635 | Not Available | Negative | 1630909 - 1631532 | 22122.6 |
| formate dehydrogenase subunit alpha | BST98_RS07640 | Not Available | Negative | 1631544 - 1634405 | 106845.0 |
| twin-arginine translocation signal domain-containing protein | BST98_RS07645 | Not Available | Negative | 1634421 - 1634621 | 7294.58 |
| molecular chaperone | BST98_RS07650 | Not Available | Negative | 1634715 - 1635317 | 22411.7 |
| 4fe-4s binding protein | BST98_RS07655 | Not Available | Negative | 1635336 - 1636994 | 60372.8 |
| duf3306 domain-containing protein | BST98_RS07660 | Not Available | Negative | 1637286 - 1638026 | 27237.4 |
| duf3305 domain-containing protein | BST98_RS07665 | Not Available | Negative | 1638016 - 1638513 | 19161.7 |
| formate dehydrogenase accessory sulfurtransferase fdhd | BST98_RS07670 | Not Available | Positive | 1638769 - 1639665 | 32809.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

