Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbca/pars/xre antitoxin family protein | BST98_RS07575 | Not Available | Negative | 1618910 - 1619311 | 14876.8 |
| peptidase t | BST98_RS07580 | Not Available | Negative | 1619453 - 1620685 | 44894.6 |
| duf2987 domain-containing protein | BST98_RS07585 | Not Available | Negative | 1620859 - 1621458 | 22808.1 |
| hypothetical protein | BST98_RS07590 | Not Available | Negative | 1621615 - 1622436 | 29656.1 |
| spermidine/putrescine abc transporter atp-binding protein pota | BST98_RS07595 | Not Available | Positive | 1622881 - 1623999 | 41666.1 |
| spermidine/putrescine abc transporter permease potb | BST98_RS07600 | Not Available | Positive | 1623983 - 1624840 | 32341.1 |
| spermidine/putrescine abc transporter permease potc | BST98_RS07605 | Not Available | Positive | 1624840 - 1625607 | 28068.5 |
| extracellular solute-binding protein | BST98_RS07610 | Not Available | Positive | 1625798 - 1626835 | 39041.4 |
| extracellular solute-binding protein | BST98_RS07615 | Not Available | Positive | 1627207 - 1628250 | 39314.6 |
| hypothetical protein | BST98_RS07620 | Not Available | Negative | 1628387 - 1628641 | 8914.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

