Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fnr family transcription factor | BST98_RS07525 | Not Available | Positive | 1608230 - 1608985 | 28290.4 |
| universal stress protein uspe | BST98_RS07530 | Not Available | Positive | 1609265 - 1610206 | 35193.0 |
| hypothetical protein | BST98_RS07535 | Not Available | Negative | 1610287 - 1610634 | 12529.1 |
| trna 2-thiocytidine(32) synthetase ttca | BST98_RS07540 | Not Available | Positive | 1610990 - 1611919 | 35156.3 |
| trypsin-like serine protease | BST98_RS07545 | Not Available | Positive | 1612115 - 1613836 | 63199.3 |
| hypothetical protein | BST98_RS07550 | Not Available | Positive | 1613840 - 1614595 | 28536.7 |
| d-alanyl-d-alanine carboxypeptidase family protein | BST98_RS07555 | Not Available | Negative | 1614727 - 1615902 | 42827.2 |
| carboxypeptidase m32 | BST98_RS07560 | Not Available | Positive | 1616239 - 1617720 | 55978.1 |
| hypothetical protein | BST98_RS07565 | Not Available | Positive | 1617887 - 1618192 | 11651.4 |
| res family nad+ phosphorylase | BST98_RS07570 | Not Available | Negative | 1618245 - 1618919 | 25252.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

