Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional 23s rrna (guanine(2069)-n(7))-methyltransferase rlmk/23s rrna (guanine(2445)-n(2))-methyltransferase rlml | BST98_RS07370 | Not Available | Positive | 1578466 - 1580610 | 80968.5 |
| glutaredoxin family protein | BST98_RS07375 | Not Available | Positive | 1580610 - 1580873 | 9831.68 |
| abc transporter atp-binding protein | BST98_RS07380 | Not Available | Positive | 1580860 - 1582788 | 72825.4 |
| duf3466 family protein | BST98_RS07385 | Not Available | Positive | 1582788 - 1584803 | 73087.9 |
| ribosome modulation factor | BST98_RS07390 | Not Available | Positive | 1584962 - 1585135 | 6606.77 |
| bifunctional 3-hydroxydecanoyl-acp dehydratase/trans-2-decenoyl-acp isomerase | BST98_RS07395 | Not Available | Negative | 1585327 - 1585842 | 18985.1 |
| aaa family atpase | BST98_RS07400 | Not Available | Negative | 1585912 - 1587654 | 64550.8 |
| macrodomain ter protein matp | BST98_RS07405 | Not Available | Positive | 1587855 - 1588310 | 17713.0 |
| duf3634 family protein | BST98_RS07410 | Not Available | Positive | 1588465 - 1588770 | 11747.8 |
| ppc domain-containing dna-binding protein | BST98_RS07415 | Not Available | Positive | 1588770 - 1589168 | 14028.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

