Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dutp diphosphatase | BST98_RS00660 | Not Available | Negative | 135004 - 135459 | 16100.3 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | BST98_RS00665 | Not Available | Negative | 135470 - 136693 | 43400.6 |
| radc family protein | BST98_RS00670 | Not Available | Positive | 136957 - 137631 | 24999.2 |
| 50s ribosomal protein l28 | BST98_RS00675 | Not Available | Positive | 137808 - 138044 | 9034.13 |
| 50s ribosomal protein l33 | BST98_RS00680 | Not Available | Positive | 138059 - 138226 | 6377.89 |
| hypothetical protein | BST98_RS00685 | Not Available | Positive | 138357 - 138836 | 18098.2 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | BST98_RS00690 | Not Available | Positive | 138861 - 139670 | 29589.9 |
| nad-dependent epimerase | BST98_RS00695 | Not Available | Positive | 139806 - 140810 | 37456.4 |
| acyltransferase | BST98_RS00700 | Not Available | Negative | 140854 - 141585 | 27081.8 |
| pantetheine-phosphate adenylyltransferase | BST98_RS00705 | Not Available | Negative | 141678 - 142166 | 18206.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

