Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | BST98_RS06855 | Not Available | Positive | 1453768 - 1455375 | 59298.6 |
| duf1656 domain-containing protein | BST98_RS06860 | Not Available | Positive | 1455381 - 1455584 | 7642.67 |
| hlyd family secretion protein | BST98_RS06865 | Not Available | Positive | 1455592 - 1456488 | 33230.1 |
| potassium channel family protein | BST98_RS06870 | Not Available | Positive | 1456533 - 1457225 | 25635.8 |
| ai-2e family transporter | BST98_RS06875 | Not Available | Positive | 1457218 - 1458345 | 40102.6 |
| ycjf family protein | BST98_RS06880 | Not Available | Positive | 1458471 - 1459634 | 43373.9 |
| gtpase family protein | BST98_RS06885 | Not Available | Positive | 1459627 - 1461171 | 57525.2 |
| sodium/sugar symporter | BST98_RS06890 | Not Available | Negative | 1461274 - 1462905 | 58760.1 |
| alanine/ornithine racemase family plp-dependent enzyme | BST98_RS06895 | Not Available | Positive | 1463308 - 1464408 | 40356.9 |
| yfcc family protein | BST98_RS06900 | Not Available | Positive | 1464401 - 1465828 | 51115.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

