Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yaii/yqxd family protein | BST98_RS06805 | Not Available | Positive | 1440494 - 1440946 | 16656.1 |
| atpase | BST98_RS06810 | Not Available | Positive | 1440978 - 1441348 | 13690.9 |
| hypothetical protein | BST98_RS06815 | Not Available | Negative | 1441332 - 1441613 | 10681.9 |
| duf2867 domain-containing protein | BST98_RS06820 | Not Available | Negative | 1442186 - 1443649 | 55113.9 |
| mate family efflux transporter | BST98_RS06825 | Not Available | Positive | 1443876 - 1445243 | 49621.1 |
| abc transporter atp-binding protein | BST98_RS06830 | Not Available | Positive | 1445577 - 1446248 | 24623.9 |
| abc transporter permease | BST98_RS06835 | Not Available | Positive | 1446229 - 1448694 | 91480.2 |
| lipocalin-like domain-containing protein | BST98_RS06840 | Not Available | Positive | 1448694 - 1449773 | 41087.7 |
| amidohydrolase | BST98_RS06845 | Not Available | Positive | 1449808 - 1451097 | 46974.6 |
| fusc family protein | BST98_RS06850 | Not Available | Positive | 1451587 - 1453725 | 81079.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

