Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-7-phosphoheptulonate synthase | BST98_RS06700 | Not Available | Negative | 1413564 - 1414622 | 38379.0 |
| putative pep-binding protein | BST98_RS06705 | Not Available | Positive | 1414914 - 1415786 | 33307.5 |
| catabolite repressor/activator | BST98_RS06710 | Not Available | Negative | 1415875 - 1416855 | 36242.7 |
| fused pts fructose transporter subunit iia/hpr protein | BST98_RS06715 | Not Available | Positive | 1417392 - 1418510 | 39576.4 |
| 1-phosphofructokinase | BST98_RS06720 | Not Available | Positive | 1418511 - 1419464 | 33681.2 |
| pts fructose transporter subunit iibc | BST98_RS06725 | Not Available | Positive | 1419474 - 1421207 | 59516.3 |
| atp-binding protein | BST98_RS06730 | Not Available | Positive | 1421553 - 1423469 | 72524.9 |
| peptide deformylase | BST98_RS06735 | Not Available | Positive | 1423652 - 1424167 | 19345.5 |
| ion channel | BST98_RS06740 | Not Available | Negative | 1424223 - 1425248 | 38946.4 |
| ld-carboxypeptidase | BST98_RS06745 | Not Available | Negative | 1425390 - 1426334 | 35275.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

