Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome hibernation-promoting factor, hpf/yfia family | BST98_RS06350 | Not Available | Negative | 1326397 - 1326762 | 14022.8 |
| l-cystine transporter | BST98_RS06355 | Not Available | Negative | 1327100 - 1328494 | 48664.5 |
| envelope biogenesis factor elyc | BST98_RS06360 | Not Available | Negative | 1328824 - 1329660 | 30984.9 |
| trna uridine 5-oxyacetic acid(34) methyltransferase cmom | BST98_RS06365 | Not Available | Positive | 1329783 - 1330580 | 30310.7 |
| chromosome partition protein mukf | BST98_RS06370 | Not Available | Positive | 1330599 - 1331921 | 50451.7 |
| chromosome partition protein muke | BST98_RS06375 | Not Available | Positive | 1331902 - 1332651 | 28393.7 |
| chromosome partition protein mukb | BST98_RS06380 | Not Available | Positive | 1332651 - 1337111 | 168776.0 |
| virk/ybjx family protein | BST98_RS06385 | Not Available | Negative | 1337265 - 1338197 | 36232.6 |
| nucleotide-binding domain-containing protein | BST98_RS06390 | Not Available | Positive | 1338511 - 1339785 | 48918.6 |
| slatt domain-containing protein | BST98_RS06395 | Not Available | Positive | 1339794 - 1340423 | 23743.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

