Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deda family protein | BST98_RS06300 | Not Available | Negative | 1316807 - 1317502 | 26055.9 |
| hypothetical protein | BST98_RS06305 | Not Available | Negative | 1317548 - 1317793 | 9571.33 |
| hded family acid-resistance protein | BST98_RS06310 | Not Available | Negative | 1318224 - 1318784 | 20348.8 |
| type ii secretion system pilot lipoprotein gsps-beta | BST98_RS06315 | Not Available | Positive | 1319037 - 1319381 | 12831.7 |
| duf2062 domain-containing protein | BST98_RS06320 | Not Available | Negative | 1319561 - 1320109 | 20814.1 |
| dna internalization-related competence protein comec/rec2 | BST98_RS06325 | Not Available | Positive | 1320141 - 1322453 | 88333.4 |
| lipid a abc transporter atp-binding protein/permease msba | BST98_RS06330 | Not Available | Positive | 1322597 - 1324354 | 64387.1 |
| tetraacyldisaccharide 4'-kinase | BST98_RS06335 | Not Available | Positive | 1324354 - 1325388 | 37990.1 |
| trm112 family protein | BST98_RS06340 | Not Available | Positive | 1325369 - 1325548 | 6686.06 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | BST98_RS06345 | Not Available | Positive | 1325550 - 1326296 | 27731.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

