Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3d domain-containing protein | BST98_RS00560 | Not Available | Positive | 112933 - 113316 | 14226.8 |
| fe-s biogenesis protein nfua | BST98_RS00565 | Not Available | Negative | 113402 - 113980 | 20813.6 |
| comf family protein | BST98_RS00570 | Not Available | Negative | 114067 - 114816 | 28696.9 |
| pimeloyl-acp methyl ester esterase bioh | BST98_RS00575 | Not Available | Positive | 114850 - 115620 | 28008.0 |
| atp-dependent lon protease | BST98_RS00580 | Not Available | Positive | 115733 - 116185 | 16716.8 |
| aaa family atpase | BST98_RS00585 | Not Available | Negative | 116236 - 117870 | 62621.1 |
| tex family protein | BST98_RS00590 | Not Available | Negative | 118032 - 120362 | 85604.0 |
| transcription elongation factor greb | BST98_RS00595 | Not Available | Negative | 120532 - 121008 | 18679.3 |
| two-component system response regulator ompr | BST98_RS00600 | Not Available | Positive | 121431 - 122150 | 27359.3 |
| two-component system sensor histidine kinase envz | BST98_RS00605 | Not Available | Positive | 122153 - 123505 | 49973.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

