Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoshikimate 1-carboxyvinyltransferase | BST98_RS05950 | Not Available | Positive | 1236200 - 1237480 | 46163.1 |
| (d)cmp kinase | BST98_RS05955 | Not Available | Positive | 1237763 - 1238440 | 24431.2 |
| 30s ribosomal protein s1 | BST98_RS05960 | Not Available | Positive | 1238565 - 1240235 | 60614.9 |
| integration host factor subunit beta | BST98_RS05965 | Not Available | Positive | 1240324 - 1240611 | 10792.0 |
| lapa family protein | BST98_RS05970 | Not Available | Positive | 1240821 - 1241105 | 10447.1 |
| lipopolysaccharide assembly protein lapb | BST98_RS05975 | Not Available | Positive | 1241112 - 1242281 | 44734.1 |
| orotidine-5'-phosphate decarboxylase | BST98_RS05980 | Not Available | Positive | 1242507 - 1243226 | 25685.0 |
| atp-binding cassette domain-containing protein | BST98_RS05985 | Not Available | Negative | 1243332 - 1244156 | 30839.9 |
| oligopeptide/dipeptide abc transporter atp-binding protein | BST98_RS05990 | Not Available | Negative | 1244153 - 1245151 | 37393.4 |
| putrescine export abc transporter permease sapc | BST98_RS05995 | Not Available | Negative | 1245151 - 1246038 | 32209.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

