Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| extracellular solute-binding protein | BST98_RS05900 | Not Available | Positive | 1224497 - 1225666 | 44136.1 |
| sensor domain-containing diguanylate cyclase | BST98_RS05905 | Not Available | Positive | 1225663 - 1227756 | 79783.0 |
| glucose-6-phosphate dehydrogenase | BST98_RS05910 | Not Available | Positive | 1228235 - 1229734 | 56705.1 |
| 6-phosphogluconolactonase | BST98_RS05915 | Not Available | Positive | 1229737 - 1230453 | 26695.6 |
| decarboxylating nadp(+)-dependent phosphogluconate dehydrogenase | BST98_RS05920 | Not Available | Positive | 1230464 - 1231912 | 52667.0 |
| duf2955 domain-containing protein | BST98_RS05925 | Not Available | Negative | 1232058 - 1233059 | 36646.9 |
| hlyd family secretion protein | BST98_RS05930 | Not Available | Negative | 1233049 - 1234161 | 40343.8 |
| permease | BST98_RS05935 | Not Available | Negative | 1234193 - 1234663 | 16869.9 |
| duf5666 domain-containing protein | BST98_RS05940 | Not Available | Positive | 1234847 - 1235527 | 24219.6 |
| nucleotide triphosphate diphosphatase nudt15 | BST98_RS05945 | Not Available | Negative | 1235629 - 1236069 | 16371.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

