Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2947 domain-containing protein | BST98_RS05550 | Not Available | Positive | 1152901 - 1153377 | 18837.9 |
| diguanylate cyclase domain-containing protein | BST98_RS05555 | Not Available | Negative | 1153425 - 1155455 | 76255.2 |
| yfir family protein | BST98_RS05560 | Not Available | Negative | 1155455 - 1156060 | 22543.7 |
| tonb-dependent receptor plug domain-containing protein | BST98_RS05565 | Not Available | Negative | 1156069 - 1158123 | 77914.7 |
| nad-dependent succinate-semialdehyde dehydrogenase | BST98_RS05570 | Not Available | Positive | 1158581 - 1160029 | 51932.4 |
| bifunctional nudix hydrolase/phosphatase pap2 family protein | BST98_RS05575 | Not Available | Positive | 1160180 - 1161709 | 57004.2 |
| fad-binding and (fe-s)-binding domain-containing protein | BST98_RS05580 | Not Available | Positive | 1161845 - 1164940 | 115138.0 |
| aquaporin z | BST98_RS05585 | Not Available | Negative | 1165040 - 1165735 | 23997.7 |
| lysr family transcriptional regulator | BST98_RS05590 | Not Available | Negative | 1166221 - 1167105 | 33198.8 |
| cation transporter | BST98_RS05595 | Not Available | Positive | 1167300 - 1167977 | 24417.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

