Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pfkb family carbohydrate kinase | BST98_RS05500 | Not Available | Positive | 1146603 - 1147529 | 35532.1 |
| hypothetical protein | BST98_RS05505 | Not Available | Negative | 1147526 - 1148338 | 30325.1 |
| Trna-cys | Not Available | Not Available | Positive | 1148577 - 1148650 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1148655 - 1148730 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 1148795 - 1148881 | Not Available |
| duf3012 domain-containing protein | BST98_RS05525 | Not Available | Negative | 1149015 - 1149197 | 6628.03 |
| hypothetical protein | BST98_RS05530 | Not Available | Positive | 1149417 - 1149668 | 9203.51 |
| duf3108 domain-containing protein | BST98_RS05535 | Not Available | Negative | 1149693 - 1150445 | 28930.8 |
| long-chain-fatty-acid--coa ligase | BST98_RS05540 | Not Available | Negative | 1150617 - 1152164 | 57205.6 |
| hypothetical protein | BST98_RS05545 | Not Available | Positive | 1152599 - 1152811 | 8101.73 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

