Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit ii | BST98_RS00510 | Not Available | Positive | 103565 - 104710 | 43026.2 |
| cytochrome c oxidase subunit i | BST98_RS00515 | Not Available | Positive | 104721 - 106337 | 59832.3 |
| cytochrome c oxidase assembly protein | BST98_RS00520 | Not Available | Positive | 106347 - 106943 | 21602.0 |
| cytochrome c oxidase subunit 3 | BST98_RS00525 | Not Available | Positive | 106953 - 107828 | 32706.6 |
| duf2909 domain-containing protein | BST98_RS00530 | Not Available | Negative | 107832 - 108038 | 7673.99 |
| surf1 family protein | BST98_RS00535 | Not Available | Positive | 108105 - 108827 | 28420.8 |
| hypothetical protein | BST98_RS00540 | Not Available | Positive | 108811 - 109401 | 21969.3 |
| cox15/ctaa family protein | BST98_RS00545 | Not Available | Positive | 109411 - 110460 | 38736.0 |
| heme o synthase | BST98_RS00550 | Not Available | Positive | 110453 - 111358 | 33301.8 |
| mate family efflux transporter dinf | BST98_RS00555 | Not Available | Positive | 111479 - 112816 | 48957.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

