Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cbs domain-containing protein | BST98_RS05300 | Not Available | Positive | 1075241 - 1075657 | 15440.9 |
| slc13 family permease | BST98_RS05305 | Not Available | Positive | 1075990 - 1077405 | 50908.7 |
| atp-binding protein | BST98_RS05310 | Not Available | Positive | 1077424 - 1078752 | 48875.7 |
| response regulator | BST98_RS05315 | Not Available | Positive | 1078762 - 1079235 | 17949.4 |
| zinc/cadmium/mercury/lead-transporting atpase | BST98_RS05320 | Not Available | Positive | 1079405 - 1081864 | 86763.8 |
| uridine phosphorylase | BST98_RS05325 | Not Available | Positive | 1082330 - 1083097 | 27350.8 |
| card1-like endonuclease domain-containing protein | BST98_RS05330 | Not Available | Negative | 1083230 - 1084396 | 44425.0 |
| lyse family translocator | BST98_RS05335 | Not Available | Negative | 1084867 - 1085520 | 23450.7 |
| retention module-containing protein | BST98_RS05340 | Not Available | Positive | 1085757 - 1102472 | 590513.0 |
| cytochrome b/b6 domain-containing protein | BST98_RS05345 | Not Available | Negative | 1102529 - 1103110 | 22181.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

