Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan-binding protein lysm | BST98_RS05250 | Not Available | Positive | 1064615 - 1065043 | 15422.0 |
| yidb family protein | BST98_RS05255 | Not Available | Positive | 1065090 - 1065542 | 15193.8 |
| lysine exporter lyso family protein | BST98_RS05260 | Not Available | Negative | 1065650 - 1066549 | 32473.8 |
| hdod domain-containing protein | BST98_RS05265 | Not Available | Negative | 1066856 - 1067770 | 34763.1 |
| tfox/sxy family dna transformation protein | BST98_RS05270 | Not Available | Positive | 1068320 - 1068910 | 22381.2 |
| dna-binding transcriptional regulator dsdc | BST98_RS05275 | Not Available | Positive | 1069014 - 1069946 | 35173.1 |
| 2-hydroxyacid dehydrogenase | BST98_RS05280 | Not Available | Negative | 1069969 - 1070964 | 37246.7 |
| response regulator | BST98_RS05285 | Not Available | Negative | 1071125 - 1071625 | 18589.1 |
| atp-binding protein | BST98_RS05290 | Not Available | Negative | 1071622 - 1073571 | 73545.1 |
| duf945 family protein | BST98_RS05295 | Not Available | Positive | 1073749 - 1075062 | 47977.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

