Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold shock domain-containing protein cspd | BST98_RS05000 | Not Available | Negative | 1002656 - 1002877 | 8084.45 |
| atp-dependent clp protease adapter clps | BST98_RS05005 | Not Available | Positive | 1003135 - 1003455 | 12245.8 |
| atp-dependent clp protease atp-binding subunit clpa | BST98_RS05010 | Not Available | Positive | 1003500 - 1005764 | 83637.1 |
| translation initiation factor if-1 | BST98_RS05015 | Not Available | Negative | 1005897 - 1006115 | 8219.13 |
| arginyltransferase | BST98_RS05020 | Not Available | Negative | 1006315 - 1007007 | 27109.1 |
| leucyl/phenylalanyl-trna--protein transferase | BST98_RS05025 | Not Available | Negative | 1007011 - 1007724 | 26934.0 |
| heme abc transporter atp-binding protein/permease cydc | BST98_RS05030 | Not Available | Negative | 1007891 - 1009612 | 63441.8 |
| heme abc transporter permease/atp-binding protein cydd | BST98_RS05035 | Not Available | Negative | 1009605 - 1011386 | 65445.8 |
| thioredoxin-disulfide reductase | BST98_RS05040 | Not Available | Negative | 1011535 - 1012494 | 34568.1 |
| leucine-responsive transcriptional regulator lrp | BST98_RS05045 | Not Available | Positive | 1013164 - 1013658 | 18861.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

