Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Coccus |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| chromosomal replication initiator protein dnaa | BST98_RS00005 | Not Available | + | 1 - 1425 | 53293.0 |
| dna polymerase iii subunit beta | BST98_RS00010 | Not Available | + | 1427 - 2524 | 40531.6 |
| dna replication/repair protein recf | BST98_RS00015 | Not Available | + | 2528 - 3610 | 40706.1 |
| dna topoisomerase (atp-hydrolyzing) subunit b | BST98_RS00020 | Not Available | + | 3630 - 6044 | 89723.5 |
| valine--pyruvate transaminase | BST98_RS00025 | Not Available | - | 6092 - 7342 | 46616.1 |
| glycine--trna ligase subunit beta | BST98_RS00030 | Not Available | - | 7564 - 9633 | 75831.8 |
| glycine--trna ligase subunit alpha | BST98_RS00035 | Not Available | - | 9643 - 10554 | 34799.4 |
| ompa family lipoprotein | BST98_RS00040 | Not Available | + | 10844 - 11533 | 23540.0 |
| tmem165/gdt1 family protein | BST98_RS00045 | Not Available | + | 11838 - 12395 | 19775.1 |
| hypothetical protein | BST98_RS00050 | Not Available | + | 12511 - 12765 | 10035.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.