Rhizobium leguminosarum strain Vaf-108

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium leguminosarum strain Vaf-108 is a Gram-negative, mesophilic bacterium that inhabits soil environments. This organism is a chemoheterotroph, deriving its energy from organic compounds. Its cellular arrangement consists of rod-shaped cells that exist as singles, and it possesses flagella, allowing for mobility in its aerobic habitat. One notable characteristic of R. leguminosarum Vaf-108 is its nonsporulating nature, which implies that it does not form spores for survival under unfavorable conditions. Instead, it maintains its viability through active growth and reproduction. The strain has three replicons and two membranes, typical features of many Gram-negative bacteria. Vaf-108 is primarily recognized for its symbiotic relationship with various host legumes, including Lens culinaris (lentil), Trifolium species (clovers), Medicago sativa (alfalfa), Lathyrus oleraceus (field pea), and Vavilovia formosa. This symbiosis is crucial for nitrogen fixation, wherein the bacterium converts atmospheric nitrogen into a form that can be utilized by the host plants, thereby enhancing soil fertility and promoting plant growth. The ecological significance of R. leguminosarum Vaf-108 lies in its role in sustainable agriculture. By establishing symbiotic relationships with legumes, it contributes to natural soil enrichment and reduces the need for chemical fertilizers, fostering healthier ecosystems and more sustainable farming practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium leguminosarum
Strainstrain Vaf-108

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium leguminosarum strain Vaf-108
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipSymbiotic
Host(s)Phaseolus vulgaris, Vicia, Lathyrus
Cell arrangementSingles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete

Gene Summary

Adenine Count

54133 bp

Thymine Count

53833 bp

Guanine Count

85553 bp

Cytosine Count

84809 bp

Genome Length

278328 bp

Protein-coding Genes

265 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinBMW22_RS35810Not AvailableNegative249642 - 25072138709.8
is5 family transposaseBMW22_RS35815Not AvailablePositive250972 - 25195836673.8
hypothetical proteinBMW22_RS35825Not AvailableNegative252294 - 2525759971.76
helix-turn-helix domain-containing proteinBMW22_RS35830Not AvailableNegative252774 - 25344824959.0
helix-turn-helix domain-containing proteinBMW22_RS35835Not AvailableNegative253491 - 25411223670.6
hypothetical proteinBMW22_RS35840Not AvailableNegative254362 - 25593057166.8
duf4158 domain-containing proteinBMW22_RS35845Not AvailableNegative255977 - 25698437335.8
calcium-binding lectin rapa2BMW22_RS35850Not AvailablePositive257202 - 25791524904.4
is630 family transposaseBMW22_RS42290Not AvailablePositive258435 - 25949539856.0
helix-turn-helix domain-containing proteinBMW22_RS35870Not AvailableNegative259519 - 26007621108.5

Displaying genes 751 – 760 of 841 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.