Rhizobium leguminosarum strain Vaf-108

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium leguminosarum strain Vaf-108 is a Gram-negative, mesophilic bacterium that inhabits soil environments. This organism is a chemoheterotroph, deriving its energy from organic compounds. Its cellular arrangement consists of rod-shaped cells that exist as singles, and it possesses flagella, allowing for mobility in its aerobic habitat. One notable characteristic of R. leguminosarum Vaf-108 is its nonsporulating nature, which implies that it does not form spores for survival under unfavorable conditions. Instead, it maintains its viability through active growth and reproduction. The strain has three replicons and two membranes, typical features of many Gram-negative bacteria. Vaf-108 is primarily recognized for its symbiotic relationship with various host legumes, including Lens culinaris (lentil), Trifolium species (clovers), Medicago sativa (alfalfa), Lathyrus oleraceus (field pea), and Vavilovia formosa. This symbiosis is crucial for nitrogen fixation, wherein the bacterium converts atmospheric nitrogen into a form that can be utilized by the host plants, thereby enhancing soil fertility and promoting plant growth. The ecological significance of R. leguminosarum Vaf-108 lies in its role in sustainable agriculture. By establishing symbiotic relationships with legumes, it contributes to natural soil enrichment and reduces the need for chemical fertilizers, fostering healthier ecosystems and more sustainable farming practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium leguminosarum
Strainstrain Vaf-108

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium leguminosarum strain Vaf-108
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipSymbiotic
Host(s)Phaseolus vulgaris, Vicia, Lathyrus
Cell arrangementSingles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete

Gene Summary

Adenine Count

54133 bp

Thymine Count

53833 bp

Guanine Count

85553 bp

Cytosine Count

84809 bp

Genome Length

278328 bp

Protein-coding Genes

265 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l,d-transpeptidaseBMW22_RS38610Not AvailableNegative216533 - 21714422816.9
laci family dna-binding transcriptional regulatorBMW22_RS38620Not AvailableNegative217436 - 21843435874.5
abc transporter atp-binding proteinBMW22_RS38625Not AvailablePositive218582 - 21967938579.8
carbohydrate abc transporter permeaseBMW22_RS38630Not AvailablePositive219676 - 22056633070.0
carbohydrate abc transporter permeaseBMW22_RS38635Not AvailablePositive220563 - 22141130981.2
extracellular solute-binding proteinBMW22_RS38640Not AvailablePositive221472 - 22280348527.6
glycoside hydrolase family 2 proteinBMW22_RS38645Not AvailablePositive222907 - 225672102282.0
alpha/beta fold hydrolaseBMW22_RS38650Not AvailablePositive225887 - 22694538639.2
class i sam-dependent methyltransferaseBMW22_RS38655Not AvailablePositive227121 - 22817037198.4
ykgj family cysteine cluster proteinBMW22_RS38660Not AvailablePositive228339 - 22868312007.1

Displaying genes 461 – 470 of 841 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.