Sphingorhabdus lutea strain LPB0140

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus lutea strain LPB0140 is characterized by having a single replicon, which is a notable trait for its genomic structure. The genetic information for this strain is documented under the accession number NZ_CP018154.1, indicating that its genomic sequence is available for further analysis and research. While specific ecological or biological roles of Sphingorhabdus lutea strain LPB0140 are not provided, the presence of a single replicon can suggest a streamlined genomic organization. This may influence its adaptability and metabolic capabilities in various environments, although specific ecological insights cannot be drawn from the available data. In summary, Sphingorhabdus lutea strain LPB0140 is defined by its single replicon and documented genomic sequence, which may offer avenues for future research into its ecological roles and potential applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus lutea
Strainstrain LPB0140

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus lutea strain LPB0140 chromosome, complete genome.

Gene Summary

Adenine Count

680779 bp

Thymine Count

684031 bp

Guanine Count

586195 bp

Cytosine Count

582036 bp

Genome Length

2533041 bp

Protein-coding Genes

2355 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux transporter outer membrane subunitLPB140_RS03100Not AvailableNegative629124 - 63057251997.7
dha2 family efflux mfs transporter permease subunitLPB140_RS03105Not AvailableNegative630581 - 63215856325.6
hlyd family secretion proteinLPB140_RS03110Not AvailableNegative632191 - 63347746533.0
hypothetical proteinLPB140_RS03115Not AvailablePositive633887 - 63540451186.3
tonb-dependent receptor domain-containing proteinLPB140_RS03120Not AvailablePositive635483 - 638248100458.0
type ii secretion system protein nLPB140_RS03125Not AvailablePositive638496 - 63929028089.9
type ii secretion system secretin gspdLPB140_RS03130Not AvailablePositive639317 - 64151877295.6
gspe/pule family proteinLPB140_RS03135Not AvailablePositive641683 - 64316753735.2
type ii secretion system inner membrane protein gspfLPB140_RS03140Not AvailablePositive643168 - 64441846412.3
type ii secretion system major pseudopilin gspgLPB140_RS03145Not AvailablePositive644420 - 64489316918.3

Displaying genes 641 – 650 of 2421 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.