Bifidobacterium choerinum strain FMB-1

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium choerinum strain FMB-1 is a rod-shaped bacterium primarily found in the rumen fluid of Bos taurus, commonly known as cattle. This strain is notable for its possession of true flagella, which may contribute to its motility within the ruminal environment. Bifidobacterium choerinum FMB-1 has two replicons, indicating a complex genomic structure that may play a role in its adaptability and functionality in the rumen. The presence of this bacterium in the rumen highlights its potential importance in the digestive processes of ruminants. The rumen serves as a fermentation chamber, where a diverse microbial community aids in the breakdown of complex carbohydrates and the production of volatile fatty acids, which are critical for the energy needs of the host animal. The role of Bifidobacterium choerinum FMB-1 in this ecosystem suggests it may contribute to the overall health and efficiency of nutrient absorption in cattle. The strain is cataloged under the accessions NZ_CP018044.1 and NZ_CP018045.1, which provide a basis for further genomic and functional studies. Understanding the specific roles and interactions of Bifidobacterium choerinum FMB-1 within the rumen microbiome could offer insights into improving livestock health and productivity, as well as enhancing the sustainability of ruminant farming systems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium choerinum
Strainstrain FMB-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen fluid
Biotic relationshipNot Available
Host(s)Bos taurus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium choerinum strain FMB-1 chromosome, complete

Gene Summary

Adenine Count

386891 bp

Thymine Count

386420 bp

Guanine Count

738911 bp

Cytosine Count

734060 bp

Genome Length

2246282 bp

Protein-coding Genes

1767 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carboxymuconolactone decarboxylase family proteinBcFMB_RS02975Not AvailableNegative772357 - 77309427387.3
cupin domain-containing proteinBcFMB_RS02980Not AvailableNegative773224 - 77366715945.8
alpha/beta hydrolaseBcFMB_RS02985Not AvailableNegative773863 - 77484935884.0
lysr family transcriptional regulatorBcFMB_RS02990Not AvailablePositive775017 - 77593434453.3
duf4234 domain-containing proteinBcFMB_RS09805Not AvailableNegative775916 - 77663226138.5
hypothetical proteinBcFMB_RS03000Not AvailableNegative776737 - 77712313857.4
flavodoxinBcFMB_RS03005Not AvailableNegative777280 - 7774807355.43
is256-like element is1249 family transposaseBcFMB_RS03010Not AvailableNegative777576 - 77875444842.6
abc transporter substrate-binding proteinBcFMB_RS09695Not AvailableNegative779064 - 77948115003.9
23s ribosomal rna methyltransferase ermBcFMB_RS03015Not AvailableNegative779646 - 78050031464.1

Displaying genes 661 – 670 of 1897 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.