Bifidobacterium choerinum strain FMB-1

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium choerinum strain FMB-1 is a rod-shaped bacterium primarily found in the rumen fluid of Bos taurus, commonly known as cattle. This strain is notable for its possession of true flagella, which may contribute to its motility within the ruminal environment. Bifidobacterium choerinum FMB-1 has two replicons, indicating a complex genomic structure that may play a role in its adaptability and functionality in the rumen. The presence of this bacterium in the rumen highlights its potential importance in the digestive processes of ruminants. The rumen serves as a fermentation chamber, where a diverse microbial community aids in the breakdown of complex carbohydrates and the production of volatile fatty acids, which are critical for the energy needs of the host animal. The role of Bifidobacterium choerinum FMB-1 in this ecosystem suggests it may contribute to the overall health and efficiency of nutrient absorption in cattle. The strain is cataloged under the accessions NZ_CP018044.1 and NZ_CP018045.1, which provide a basis for further genomic and functional studies. Understanding the specific roles and interactions of Bifidobacterium choerinum FMB-1 within the rumen microbiome could offer insights into improving livestock health and productivity, as well as enhancing the sustainability of ruminant farming systems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium choerinum
Strainstrain FMB-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen fluid
Biotic relationshipNot Available
Host(s)Bos taurus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium choerinum strain FMB-1 chromosome, complete

Gene Summary

Adenine Count

386891 bp

Thymine Count

386420 bp

Guanine Count

738911 bp

Cytosine Count

734060 bp

Genome Length

2246282 bp

Protein-coding Genes

1767 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal 5'-phosphate synthase lyase subunit pdxsBcFMB_RS01120Not AvailablePositive293229 - 29410431303.7
pyridoxal 5'-phosphate synthase glutaminase subunit pdxtBcFMB_RS01125Not AvailablePositive294117 - 29476722848.1
atp-binding cassette domain-containing proteinBcFMB_RS01130Not AvailableNegative294853 - 298470129710.0
amp-dependent synthetase/ligaseBcFMB_RS01135Not AvailablePositive298730 - 30055065570.4
duf4422 domain-containing proteinBcFMB_RS01140Not AvailablePositive300564 - 30115422967.5
low molecular weight phosphatase family proteinBcFMB_RS01145Not AvailablePositive301151 - 30171420416.5
beta-1,6-n-acetylglucosaminyltransferaseBcFMB_RS01150Not AvailableNegative301719 - 30258533337.5
glycosyltransferase family 2 proteinBcFMB_RS01155Not AvailableNegative302622 - 30362036878.9
polysaccharide pyruvyl transferase family proteinBcFMB_RS01160Not AvailablePositive303759 - 30473937531.0
lipopolysaccharide biosynthesis proteinBcFMB_RS01165Not AvailablePositive304736 - 30627756926.0

Displaying genes 311 – 320 of 1897 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.